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* sci-biology/foldingathome: Permit dev-libs/openssl-compatMichał Górny2019-06-141-1/+4
| | | | | Signed-off-by: Michał Górny <mgorny@gentoo.org> Signed-off-by: Thomas Deutschmann <whissi@gentoo.org>
* sci-biology/{blossoc,snpfile}: Remove last-rited pkgsDavid Seifert2019-05-1912-974/+0
| | | | | Closes: https://bugs.gentoo.org/683762 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/cufflinks: Remove last-rited pkgDavid Seifert2019-05-1910-314/+0
| | | | | Closes: https://bugs.gentoo.org/671432 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/arb: remove last rited packageMikle Kolyada2019-05-026-281/+0
| | | | Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-biology/biopython: Bump to version 1.73David Seifert2019-04-212-0/+59
| | | | | Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: David Seifert <soap@gentoo.org>
* */*: Remove python3_4 PYTHON_COMPAT correctlyMichał Górny2019-04-176-12/+12
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* */*: Drop python3_4 from PYTHON_COMPATMichał Górny2019-04-161-1/+1
| | | | | Closes: https://github.com/gentoo/gentoo/pull/11706 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-biology/consed: Fix building under GCC 7+David Seifert2019-04-062-1/+20
| | | | | | | | | | | consed (and MOTIF programs in general) is very sensitive to link order: * http://users.polytech.unice.fr/~buffa/cours/X11_Motif/motif-faq/part9/faq-doc-10.html * https://bugzilla.redhat.com/show_bug.cgi?id=870712 Closes: https://bugs.gentoo.org/681920 Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/bioruby: add 1.5.2Hans de Graaff2019-02-242-0/+23
| | | | | Signed-off-by: Hans de Graaff <graaff@gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11
* sci-biology/ucsc-genome-browser: Revbump to fix dependenciesBrian Evans2019-02-151-6/+8
| | | | | | | | | Non-maintainer commit Closes: https://bugs.gentoo.org/667578 Closes: https://bugs.gentoo.org/666050 Package-Manager: Portage-2.3.60, Repoman-2.3.12 Signed-off-by: Brian Evans <grknight@gentoo.org>
* sci-biology/phred: don't reference ${DISTDIR} in pkg_nofetchBen Kohler2019-02-051-2/+2
| | | | | Package-Manager: Portage-2.3.59, Repoman-2.3.12 Signed-off-by: Ben Kohler <bkohler@gentoo.org>
* sci-biology/phrap: don't reference ${DISTDIR} in pkg_nofetchBen Kohler2019-02-051-2/+2
| | | | | Package-Manager: Portage-2.3.59, Repoman-2.3.12 Signed-off-by: Ben Kohler <bkohler@gentoo.org>
* sci-biology/consed: don't reference ${DISTDIR} in pkg_nofetchBen Kohler2019-02-051-3/+3
| | | | | Package-Manager: Portage-2.3.59, Repoman-2.3.12 Signed-off-by: Ben Kohler <bkohler@gentoo.org>
* sci-biology/repeatmasker-libraries: don't reference ${DISTDIR}Ben Kohler2019-02-051-2/+2
| | | | | Package-Manager: Portage-2.3.59, Repoman-2.3.12 Signed-off-by: Ben Kohler <bkohler@gentoo.org>
* sci-biology/rebase: Version BumpJustin Lecher2018-12-312-0/+46
| | | | | Package-Manager: Portage-2.3.53, Repoman-2.3.12 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/bamtools: Bump to EAPI 7David Seifert2018-12-132-32/+12
| | | | | Package-Manager: Portage-2.3.52, Repoman-2.3.12 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/bcftools: Version bump to 1.9David Seifert2018-10-283-0/+56
| | | | | | Closes: https://bugs.gentoo.org/647714 Signed-off-by: David Seifert <soap@gentoo.org> Package-Manager: Portage-2.3.50, Repoman-2.3.11
* sci-biology/samtools: Version bump to 1.9David Seifert2018-10-282-0/+53
| | | | | | Bug: https://bugs.gentoo.org/647714 Signed-off-by: David Seifert <soap@gentoo.org> Package-Manager: Portage-2.3.50, Repoman-2.3.11
* sci-biology/allpathslg: Fix build with glibc-2.27Pacho Ramos2018-10-211-1/+4
| | | | | | Closes: https://bugs.gentoo.org/647340 Signed-off-by: Pacho Ramos <pacho@gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11
* sci-biology/rebase: Version BumpJustin Lecher2018-10-212-0/+46
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.40, Repoman-2.3.9
* sci-biology/fasttree: Drop 2.1.7Andreas Sturmlechner2018-10-144-80/+5
| | | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11
* sci-biology/express: Drop oldAndreas Sturmlechner2018-10-142-36/+0
| | | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11
* sci-biology/express: EAPI-6 bumpAndreas Sturmlechner2018-10-141-3/+4
| | | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11
* sci-biology/vaal: Add build fix for glibc 2.27Andreas K. Hüttel2018-09-292-1/+14
| | | | | | Closes: https://bugs.gentoo.org/647878 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org> Package-Manager: Portage-2.3.49, Repoman-2.3.10
* sci-biology/foldingathome: bump to 7.5.1Ian Stakenvicius2018-09-142-15/+18
| | | | | | | Upstream has dropped support for 32bit Closes: https://bugs.gentoo.org/666208 Package-Manager: Portage-2.3.40, Repoman-2.3.9
* sci-biology/psipred: Remove support for non-existent depsMichał Górny2018-08-264-8/+8
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* sci-biology/biopython: x86 stable (bug #659292)Thomas Deutschmann2018-07-021-1/+1
| | | | Package-Manager: Portage-2.3.40, Repoman-2.3.9
* sci-biology/biopython: amd64 stable, bug #659292Pacho Ramos2018-07-011-1/+1
| | | | Package-Manager: Portage-2.3.41, Repoman-2.3.9
* sci-biology/cufflinks: Fix implicit conversion in make_pair callDavid Seifert2018-06-302-1/+13
| | | | | Closes: https://bugs.gentoo.org/650416 Package-Manager: Portage-2.3.41, Repoman-2.3.9
* sci-biology/rebase: Bump to latest releaseJustin Lecher2018-06-092-0/+46
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.40, Repoman-2.3.9
* sci-biology/aaindex: use HTTPsMichael Mair-Keimberger2018-06-091-2/+2
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* sci-biology/bamtools: Use ninja for buildingDavid Seifert2018-06-022-2/+4
| | | | Package-Manager: Portage-2.3.40, Repoman-2.3.9
* sci-biology/biopython: Bump to 1.71David Seifert2018-05-272-0/+58
| | | | | Closes: https://bugs.gentoo.org/653006 Package-Manager: Portage-2.3.40, Repoman-2.3.9
* sci-biology/phylip: Update dependencies (x11-proto/* -> x11-base/xorg-proto).Arfrever Frehtes Taifersar Arahesis2018-05-213-5/+5
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* sci-biology/wgs-assembler: remove oldMichael Mair-Keimberger2018-05-211-67/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/8512
* sci-biology/glimmer: use HTTPsMichael Mair-Keimberger2018-05-212-5/+5
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* sci-biology/velvet: use HTTPsMichael Mair-Keimberger2018-05-212-6/+6
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* sci-biology/mafft: use HTTPsMichael Mair-Keimberger2018-05-213-9/+9
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* sci-biology/mothur: use HTTPsMichael Mair-Keimberger2018-05-211-3/+3
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* sci-biology/prosite: use HTTPsMichael Mair-Keimberger2018-05-211-2/+2
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* sci-biology/ncbi-tools: use HTTPsMichael Mair-Keimberger2018-05-211-2/+2
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* sci-biology/fasta: use HTTPsMichael Mair-Keimberger2018-05-211-2/+2
| | | | Closes: https://github.com/gentoo/gentoo/pull/8513
* sci-biology/seqan: inherit versionatorAndreas Sturmlechner2018-05-191-2/+2
| | | | Package-Manager: Portage-2.3.38, Repoman-2.3.9
* sci-biology/seqan: inherit versionatorAndreas Sturmlechner2018-05-181-2/+2
| | | | Package-Manager: Portage-2.3.38, Repoman-2.3.9
* sci-biology/biopandas: Drop oldAndreas Sturmlechner2018-05-162-43/+0
| | | | Package-Manager: Portage-2.3.36, Repoman-2.3.9
* sci-biology/wgs-assembler: amd64 stable wrt bug #374815Agostino Sarubbo2018-05-081-1/+1
| | | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6 RepoMan-Options: --include-arches="amd64"
* sci-biology/wgs-assembler: x86 stable (bug #374815)Thomas Deutschmann2018-05-071-1/+1
| | | | Package-Manager: Portage-2.3.34, Repoman-2.3.9
* sci-biology/bioruby: add ruby24Hans de Graaff2018-05-061-1/+1
| | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/wgs-assembler: Revision bump using libtirpc, bug 374815Andreas K. Hüttel2018-04-292-0/+88
| | | | | Bug: https://bugs.gentoo.org/374815 Package-Manager: Portage-2.3.31, Repoman-2.3.9
* update pypi HOMEPAGE to avoid redirectionMichael Mair-Keimberger2018-04-263-3/+3
| | | | Closes: https://github.com/gentoo/gentoo/pull/8080