proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

1 files changed, 68 insertions, 0 deletions

diff --git a/sci-biology/bioperl/bioperl-1.6.9.ebuild b/sci-biology/bioperl/bioperl-1.6.9.ebuild
new file mode 100644
index 000000000000..afaa8236b5a2
--- /dev/null
+++ b/sci-biology/bioperl/bioperl-1.6.9.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="5"
+
+MY_PN=BioPerl
+MODULE_AUTHOR=CJFIELDS
+MODULE_VERSION=1.6.901
+inherit perl-module
+
+SUBPROJECTS="+db +network +run"
+MIN_PV=$PV
+
+DESCRIPTION="Perl tools for bioinformatics - Core modules"
+HOMEPAGE="http://www.bioperl.org/"
+SLOT="0"
+KEYWORDS="amd64 x86"
+IUSE="-minimal graphviz sqlite ${SUBPROJECTS}"
+
+REQUIRED_USE="minimal? ( !graphviz )"
+
+CDEPEND="
+	dev-perl/libwww-perl
+	!minimal? (
+		dev-perl/Algorithm-Munkres
+		dev-perl/Array-Compare
+		dev-perl/yaml
+		dev-perl/Bio-ASN1-EntrezGene
+		dev-perl/Clone
+		dev-perl/Convert-Binary-C
+		dev-perl/Data-Stag
+		dev-perl/GD
+		dev-perl/Graph
+		>=dev-perl/HTML-Parser-3.60
+		dev-perl/List-MoreUtils
+		dev-perl/Math-Random
+		dev-perl/PostScript
+		dev-perl/set-scalar
+		dev-perl/SOAP-Lite
+		dev-perl/Sort-Naturally
+		dev-perl/Spreadsheet-ParseExcel
+		>=virtual/perl-Storable-2.05
+		>=dev-perl/SVG-2.26
+		>=dev-perl/SVG-Graph-0.01
+		dev-perl/URI
+		>=dev-perl/XML-DOM-XPath-0.13
+		dev-perl/XML-Parser
+		>=dev-perl/XML-SAX-0.15
+		dev-perl/XML-Simple
+		dev-perl/XML-Twig
+		>=dev-perl/XML-Writer-0.4
+		dev-perl/XML-DOM
+		dev-perl/XML-XPath
+	)
+	graphviz? ( dev-perl/GraphViz )
+	sqlite? ( dev-perl/DBD-SQLite )"
+DEPEND="dev-perl/Module-Build
+	${CDEPEND}"
+RDEPEND="${CDEPEND}"
+PDEPEND="db? ( >=sci-biology/bioperl-db-${MIN_PV} )
+	network? ( >=sci-biology/bioperl-network-${MIN_PV} )
+	run? ( >=sci-biology/bioperl-run-${MIN_PV} )"
+
+src_install() {
+	mydoc="AUTHORS BUGS FAQ"
+	perl-module_src_install
+}