2017-02-19 21:22:45 UTC

12 files changed, 73 insertions, 71 deletions

diff --git a/metadata/md5-cache/dev-db/spatialite-4.1.1 b/metadata/md5-cache/dev-db/spatialite-4.1.1
deleted file mode 100644
index 1efb4652e2a4..000000000000
--- a/metadata/md5-cache/dev-db/spatialite-4.1.1
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=configure install prepare
-DEPEND=>=dev-db/sqlite-3.7.5:3[extensions(+)] geos? ( >=sci-libs/geos-3.3 ) proj? ( sci-libs/proj ) xls? ( dev-libs/freexl )
-DESCRIPTION=A complete Spatial DBMS in a nutshell built upon sqlite
-EAPI=5
-HOMEPAGE=http://www.gaia-gis.it/gaia-sins/
-IUSE=+geos iconv +proj +xls
-KEYWORDS=~amd64 ~arm ~ppc ~ppc64 ~x86
-LICENSE=MPL-1.1
-RDEPEND=>=dev-db/sqlite-3.7.5:3[extensions(+)] geos? ( >=sci-libs/geos-3.3 ) proj? ( sci-libs/proj ) xls? ( dev-libs/freexl )
-SLOT=0
-SRC_URI=http://www.gaia-gis.it/gaia-sins/libspatialite-sources/libspatialite-4.1.1.tar.gz
-_eclass_exported_funcs=src_prepare:- src_configure:- src_install:-
-_eclasses_=eutils	ea170b525f6a38a006be05c9d9429f13	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=617cf9771a7837697983483ff56abb79
diff --git a/metadata/md5-cache/dev-db/spatialite-4.3.0 b/metadata/md5-cache/dev-db/spatialite-4.3.0
deleted file mode 100644
index 4f9169b83123..000000000000
--- a/metadata/md5-cache/dev-db/spatialite-4.3.0
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=configure install
-DEPEND=>=dev-db/sqlite-3.7.5:3[extensions(+)] geos? ( >=sci-libs/geos-3.3 ) proj? ( sci-libs/proj ) xls? ( dev-libs/freexl )
-DESCRIPTION=A complete Spatial DBMS in a nutshell built upon sqlite
-EAPI=6
-HOMEPAGE=http://www.gaia-gis.it/gaia-sins/
-IUSE=+geos iconv +proj +xls
-KEYWORDS=~amd64 ~arm ~ppc ~ppc64 ~x86
-LICENSE=MPL-1.1
-RDEPEND=>=dev-db/sqlite-3.7.5:3[extensions(+)] geos? ( >=sci-libs/geos-3.3 ) proj? ( sci-libs/proj ) xls? ( dev-libs/freexl )
-SLOT=0
-SRC_URI=http://www.gaia-gis.it/gaia-sins/libspatialite-sources/libspatialite-4.3.0.tar.gz
-_eclass_exported_funcs=src_configure:- src_install:-
-_eclasses_=eutils	ea170b525f6a38a006be05c9d9429f13	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=3e467635df2580f005387c06421383e3
diff --git a/metadata/md5-cache/dev-db/spatialite-4.3.0-r1 b/metadata/md5-cache/dev-db/spatialite-4.3.0-r1
new file mode 100644
index 000000000000..2b2583dc758a
--- /dev/null
+++ b/metadata/md5-cache/dev-db/spatialite-4.3.0-r1
@@ -0,0 +1,14 @@
+DEFINED_PHASES=configure install
+DEPEND=>=dev-db/sqlite-3.7.5:3[extensions(+)] sys-libs/zlib geos? ( >=sci-libs/geos-3.4 ) proj? ( sci-libs/proj ) xls? ( dev-libs/freexl ) xml? ( dev-libs/libxml2 )
+DESCRIPTION=A complete Spatial DBMS in a nutshell built upon sqlite
+EAPI=6
+HOMEPAGE=https://www.gaia-gis.it/gaia-sins/
+IUSE=+geos iconv +proj test +xls +xml
+KEYWORDS=~amd64 ~arm ~ppc ~ppc64 ~x86
+LICENSE=MPL-1.1
+RDEPEND=>=dev-db/sqlite-3.7.5:3[extensions(+)] sys-libs/zlib geos? ( >=sci-libs/geos-3.4 ) proj? ( sci-libs/proj ) xls? ( dev-libs/freexl ) xml? ( dev-libs/libxml2 )
+REQUIRED_USE=test? ( iconv )
+SLOT=0
+SRC_URI=https://www.gaia-gis.it/gaia-sins/libspatialite-sources/libspatialite-4.3.0.tar.gz
+_eclass_exported_funcs=src_configure:- src_install:-
+_md5_=9f852f2d30c9b575f8e926d154b5c63b
diff --git a/metadata/md5-cache/dev-db/spatialite-4.3.0a b/metadata/md5-cache/dev-db/spatialite-4.3.0a
new file mode 100644
index 000000000000..f7bf38858dd7
--- /dev/null
+++ b/metadata/md5-cache/dev-db/spatialite-4.3.0a
@@ -0,0 +1,14 @@
+DEFINED_PHASES=configure install
+DEPEND=>=dev-db/sqlite-3.7.5:3[extensions(+)] sys-libs/zlib geos? ( >=sci-libs/geos-3.4 ) proj? ( sci-libs/proj ) xls? ( dev-libs/freexl ) xml? ( dev-libs/libxml2 )
+DESCRIPTION=A complete Spatial DBMS in a nutshell built upon sqlite
+EAPI=6
+HOMEPAGE=https://www.gaia-gis.it/gaia-sins/
+IUSE=+geos iconv +proj test +xls +xml
+KEYWORDS=~amd64 ~arm ~ppc ~ppc64 ~x86
+LICENSE=MPL-1.1
+RDEPEND=>=dev-db/sqlite-3.7.5:3[extensions(+)] sys-libs/zlib geos? ( >=sci-libs/geos-3.4 ) proj? ( sci-libs/proj ) xls? ( dev-libs/freexl ) xml? ( dev-libs/libxml2 )
+REQUIRED_USE=test? ( iconv )
+SLOT=0
+SRC_URI=https://www.gaia-gis.it/gaia-sins/libspatialite-sources/libspatialite-4.3.0a.tar.gz
+_eclass_exported_funcs=src_configure:- src_install:-
+_md5_=9f852f2d30c9b575f8e926d154b5c63b
diff --git a/metadata/md5-cache/dev-db/spatialite-tools-4.3.0 b/metadata/md5-cache/dev-db/spatialite-tools-4.3.0
deleted file mode 100644
index 16981a40e035..000000000000
--- a/metadata/md5-cache/dev-db/spatialite-tools-4.3.0
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=configure
-DEPEND=>=dev-db/spatialite-3.0.1[geos,xls] dev-libs/expat >=sci-libs/geos-3.3 sci-libs/proj sci-geosciences/readosm readline? ( sys-libs/ncurses:= sys-libs/readline:= )
-DESCRIPTION=A complete Spatial DBMS in a nutshell built upon sqlite
-EAPI=6
-HOMEPAGE=http://www.gaia-gis.it/spatialite
-IUSE=readline
-KEYWORDS=~amd64 ~x86
-LICENSE=MPL-1.1
-RDEPEND=>=dev-db/spatialite-3.0.1[geos,xls] dev-libs/expat >=sci-libs/geos-3.3 sci-libs/proj sci-geosciences/readosm readline? ( sys-libs/ncurses:= sys-libs/readline:= )
-SLOT=0
-SRC_URI=http://www.gaia-gis.it/gaia-sins/spatialite-tools-sources/spatialite-tools-4.3.0.tar.gz
-_eclass_exported_funcs=src_configure:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=8d671ae3b3089205ffae7264e42b87ab
diff --git a/metadata/md5-cache/dev-db/spatialite-tools-4.3.0-r1 b/metadata/md5-cache/dev-db/spatialite-tools-4.3.0-r1
new file mode 100644
index 000000000000..f1ecbfdc4c57
--- /dev/null
+++ b/metadata/md5-cache/dev-db/spatialite-tools-4.3.0-r1
@@ -0,0 +1,13 @@
+DEFINED_PHASES=configure
+DEPEND=dev-db/sqlite:3[extensions(+)] >=dev-db/spatialite-3.0.1[geos,xls] dev-libs/expat dev-libs/libxml2 sci-geosciences/readosm sci-libs/geos sci-libs/proj readline? ( sys-libs/ncurses:= sys-libs/readline:= )
+DESCRIPTION=A collection of CLI tools supporting SpatiaLite
+EAPI=6
+HOMEPAGE=https://www.gaia-gis.it/spatialite
+IUSE=readline
+KEYWORDS=~amd64 ~x86
+LICENSE=MPL-1.1
+RDEPEND=dev-db/sqlite:3[extensions(+)] >=dev-db/spatialite-3.0.1[geos,xls] dev-libs/expat dev-libs/libxml2 sci-geosciences/readosm sci-libs/geos sci-libs/proj readline? ( sys-libs/ncurses:= sys-libs/readline:= )
+SLOT=0
+SRC_URI=https://www.gaia-gis.it/gaia-sins/spatialite-tools-sources/spatialite-tools-4.3.0.tar.gz
+_eclass_exported_funcs=src_configure:-
+_md5_=8e482179a19da3c7a6e4586006d057ae
diff --git a/metadata/md5-cache/sci-biology/rebase-1702 b/metadata/md5-cache/sci-biology/rebase-1702
new file mode 100644
index 000000000000..ee2dc75d7c3e
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/rebase-1702
@@ -0,0 +1,14 @@
+DEFINED_PHASES=compile install
+DEPEND=emboss? ( >=sci-biology/emboss-5.0.0 )
+DESCRIPTION=A restriction enzyme database
+EAPI=6
+HOMEPAGE=http://rebase.neb.com
+IUSE=emboss minimal
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris
+LICENSE=public-domain
+RDEPEND=emboss? ( >=sci-biology/emboss-5.0.0 )
+RESTRICT=binchecks strip
+SLOT=0
+SRC_URI=https://dev.gentoo.org/~jlec/distfiles/rebase-1702.tar.xz
+_eclass_exported_funcs=src_compile:- src_install:-
+_md5_=dde9bc2abd9c51b448f10e38da9a4917
diff --git a/metadata/md5-cache/sci-geosciences/readosm-1.0.0 b/metadata/md5-cache/sci-geosciences/readosm-1.0.0
deleted file mode 100644
index f5226e223c12..000000000000
--- a/metadata/md5-cache/sci-geosciences/readosm-1.0.0
+++ /dev/null
@@ -1,12 +0,0 @@
-DEFINED_PHASES=configure install
-DESCRIPTION=A complete Spatial DBMS in a nutshell built upon sqlite
-EAPI=4
-HOMEPAGE=http://www.gaia-gis.it/spatialite
-IUSE=static-libs
-KEYWORDS=~amd64 ~x86
-LICENSE=MPL-1.1
-SLOT=0
-SRC_URI=http://www.gaia-gis.it/gaia-sins/readosm-sources/readosm-1.0.0.tar.gz
-_eclass_exported_funcs=src_configure:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=2bfb53085a4ed30702dc9a400dd1c79a
diff --git a/metadata/md5-cache/sci-geosciences/readosm-1.0.0e b/metadata/md5-cache/sci-geosciences/readosm-1.0.0e
deleted file mode 100644
index 858c245ec0c7..000000000000
--- a/metadata/md5-cache/sci-geosciences/readosm-1.0.0e
+++ /dev/null
@@ -1,12 +0,0 @@
-DEFINED_PHASES=configure install
-DESCRIPTION=A complete Spatial DBMS in a nutshell built upon sqlite
-EAPI=6
-HOMEPAGE=http://www.gaia-gis.it/spatialite
-IUSE=static-libs
-KEYWORDS=~amd64 ~x86
-LICENSE=MPL-1.1
-SLOT=0
-SRC_URI=http://www.gaia-gis.it/gaia-sins/readosm-sources/readosm-1.0.0e.tar.gz
-_eclass_exported_funcs=src_configure:- src_install:-
-_eclasses_=eutils	ea170b525f6a38a006be05c9d9429f13	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=960dd338871ce5d60bcf19ac9339652c
diff --git a/metadata/md5-cache/sci-geosciences/readosm-1.0.0e-r1 b/metadata/md5-cache/sci-geosciences/readosm-1.0.0e-r1
new file mode 100644
index 000000000000..0d6d4142d9c3
--- /dev/null
+++ b/metadata/md5-cache/sci-geosciences/readosm-1.0.0e-r1
@@ -0,0 +1,13 @@
+DEFINED_PHASES=configure install
+DEPEND=dev-libs/expat sys-libs/zlib
+DESCRIPTION=Library to extract valid data from an Open Street Map input file
+EAPI=6
+HOMEPAGE=https://www.gaia-gis.it/spatialite
+IUSE=static-libs
+KEYWORDS=~amd64 ~x86
+LICENSE=MPL-1.1
+RDEPEND=dev-libs/expat sys-libs/zlib
+SLOT=0
+SRC_URI=https://www.gaia-gis.it/gaia-sins/readosm-sources/readosm-1.0.0e.tar.gz
+_eclass_exported_funcs=src_configure:- src_install:-
+_md5_=a2ebcb312d9460c06476a0bfd5483844
diff --git a/metadata/pkg_desc_index b/metadata/pkg_desc_index
index df2e50eaac25..f5674da96949 100644
--- a/metadata/pkg_desc_index
+++ b/metadata/pkg_desc_index
@@ -2986,8 +2986,8 @@ dev-db/rethinkdb 2.3.5: The open-source database for the realtime web.
 dev-db/rqlite 2.1 3.0.1 9999: Replicated SQLite using the Raft consensus protocol
 dev-db/slony1 2.1.3 2.1.4 2.2.0 2.2.1 2.2.2 2.2.3 2.2.4 2.2.5: A replication system for the PostgreSQL Database Management System
 dev-db/soci 3.2.2 3.2.3: A db access library for C++ that makes the illusion of embedding SQL queries in the regular C++ code
-dev-db/spatialite 2.4.0_rc4 3.0.1 4.1.1 4.3.0: A complete Spatial DBMS in a nutshell built upon sqlite
-dev-db/spatialite-tools 3.1.0 4.3.0: A complete Spatial DBMS in a nutshell built upon sqlite
+dev-db/spatialite 2.4.0_rc4 3.0.1 4.3.0-r1 4.3.0a: A complete Spatial DBMS in a nutshell built upon sqlite
+dev-db/spatialite-tools 3.1.0 4.3.0-r1: A collection of CLI tools supporting SpatiaLite
 dev-db/sqlcipher 3.3.0 3.4.0: Full Database Encryption for SQLite
 dev-db/sqldeveloper 4.0.2.15.21 4.1.3.20.78-r1 4.1.5.21.78: Oracle SQL Developer is a graphical tool for database development
 dev-db/sqlite 3.12.0 3.12.1 3.12.2 3.13.0 3.14.1 3.14.2 3.15.1 3.15.2 3.16.2: A SQL Database Engine in a C Library
@@ -15927,7 +15927,7 @@ sci-biology/psipred 3.2.1 3.3 3.4 3.5: Protein Secondary Structure Prediction
 sci-biology/pysam 0.9.0: Python interface for the SAM/BAM sequence alignment and mapping format
 sci-biology/qrna 2.0.3c-r2: Prototype ncRNA genefinder
 sci-biology/raxml 7.2.6: Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees
-sci-biology/rebase 1701: A restriction enzyme database
+sci-biology/rebase 1701 1702: A restriction enzyme database
 sci-biology/recon 1.06-r1 1.06-r2: Automated de novo identification of repeat families from genomic sequences
 sci-biology/repeatmasker 4.0.1: Screen DNA sequences for interspersed repeats and low complexity DNA
 sci-biology/repeatmasker-libraries 20120418: A special version of RepBase used by RepeatMasker
@@ -16203,7 +16203,7 @@ sci-geosciences/osm-gps-map 0.7.3 1.1.0: A GTK+ widget for displaying OpenStreet
 sci-geosciences/osm2pgsql 0.84.0 0.86.0 0.87.0 0.87.1 0.88.1 0.90.0 99999999: Converts OSM planet.osm data to a PostgreSQL/PostGIS database
 sci-geosciences/qgis 1.8.0 2.14.5-r1 2.18.2-r3 2.18.3-r1: User friendly Geographic Information System
 sci-geosciences/qmapshack 1.6.1-r2 1.6.3 1.7.1: GPS mapping utility
-sci-geosciences/readosm 1.0.0 1.0.0e: A complete Spatial DBMS in a nutshell built upon sqlite
+sci-geosciences/readosm 1.0.0e-r1: Library to extract valid data from an Open Street Map input file
 sci-geosciences/routino 3.1.1: Routing application based on openstreetmap data
 sci-geosciences/seawater 2.0.1 3.3.2 3.3.3 3.3.4: Python version of the SEAWATER 3.2 MATLAB toolkit for calculating the properties of sea water
 sci-geosciences/swmm 5.0.022: Storm Water Management Model - SWMM, hydrology, hydraulics, and water quality model
diff --git a/metadata/timestamp.chk b/metadata/timestamp.chk
index 8e2aad4d85f1..f6930c08a7f0 100644
--- a/metadata/timestamp.chk
+++ b/metadata/timestamp.chk
@@ -1 +1 @@
-Sun, 19 Feb 2017 20:42:50 +0000
+Sun, 19 Feb 2017 21:22:46 +0000