| Commit message (Collapse) | Author | Age | Files | Lines | |
|---|---|---|---|---|---|
| * | sci-biology/allpaths: Respect CXXFLAGS |   Justin Lecher | 2012-08-30 | 3 | -7/+18 |
| | | | | | Package-Manager: portage-2.2.0_alpha123/cvs/Linux x86_64 | ||||
| * | sci-biology/allpaths: Fix for gcc-4.7 | Justin Lecher | 2012-08-30 | 4 | -26/+158 |
| | | | | | Package-Manager: portage-2.2.0_alpha123/cvs/Linux x86_64 | ||||
| * | sci-biology/meme: Version Bump; respect CFLAGS, #430774 | Justin Lecher | 2012-08-26 | 4 | -18/+241 |
| | | | | | Package-Manager: portage-2.2.0_alpha122/cvs/Linux x86_64 | ||||
| * | sci-biology/seaview: Version Bump; Drop overlinking, #431074 | Justin Lecher | 2012-08-26 | 5 | -43/+72 |
| | | | | | Package-Manager: portage-2.2.0_alpha122/cvs/Linux x86_64 | ||||
| * | sci-biology/recon: Respect CFLAGS and CC, #432660 | Justin Lecher | 2012-08-26 | 4 | -12/+84 |
| | | | | | Package-Manager: portage-2.2.0_alpha122/cvs/Linux x86_64 | ||||
| * | sci-biology/arb: Version BUmp; add fix for gcc-4.7, #431228 | Justin Lecher | 2012-08-14 | 5 | -22/+129 |
| | | | | | Package-Manager: portage-2.2.0_alpha121/cvs/Linux x86_64 | ||||
| * | sci-biology/mothur: Version BUmp; fix for buffer overflows, #431258 | Justin Lecher | 2012-08-14 | 8 | -13/+340 |
| | | | | | Package-Manager: portage-2.2.0_alpha121/cvs/Linux x86_64 | ||||
| * | sci-biology/uchime: New addition | Justin Lecher | 2012-08-14 | 6 | -12/+95 |
| | | | | | Package-Manager: portage-2.2.0_alpha121/cvs/Linux x86_64 | ||||
| * | sci-biology/rnaview: Respect CFLAGS, #429536; Bump to EAPI=4 | Justin Lecher | 2012-08-03 | 4 | -43/+112 |
| | | | | | Package-Manager: portage-2.2.0_alpha120/cvs/Linux x86_64 | ||||
| * | sci-biology/tree-puzzle: Mask stupid test, which fails due to precision ↵ | Justin Lecher | 2012-08-01 | 4 | -11/+39 |
| | | | | | | | reached depending on optimization used at compile time, #297646; fix move to EAPI=4, #429354 Package-Manager: portage-2.2.0_alpha120/cvs/Linux x86_64 | ||||
| * | sci-biology/finchtv: Use QA_PREBUILT for binary packages | Justin Lecher | 2012-07-24 | 4 | -20/+26 |
| | | | | | Package-Manager: portage-2.2.0_alpha120/cvs/Linux x86_64 | ||||
| * | Remove package |   Pacho Ramos | 2012-07-21 | 4 | -118/+0 |
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| * | sci-biology/primer3: Version BUmp | Justin Lecher | 2012-07-19 | 4 | -19/+84 |
| | | | | | Package-Manager: portage-2.2.0_alpha120/cvs/Linux x86_64 | ||||
| * | sci-biology/tophat: Version BUmp; do parallel builds; handle debug build | Justin Lecher | 2012-07-19 | 6 | -26/+190 |
| | | | | | Package-Manager: portage-2.2.0_alpha120/cvs/Linux x86_64 | ||||
| * | sci-biology/vcftools: Version BUmp, fix build system | Justin Lecher | 2012-07-19 | 4 | -10/+117 |
| | | | | | Package-Manager: portage-2.2.0_alpha120/cvs/Linux x86_64 | ||||
| * | sci-biology/goby-cpp: Version Bump, handle static-libs | Justin Lecher | 2012-07-19 | 3 | -12/+52 |
| | | | | | Package-Manager: portage-2.2.0_alpha120/cvs/Linux x86_64 | ||||
| * | Fix broken Manifest entry for infernal-1.0.2-perl-5.16.patch. |   Zac Medico | 2012-07-16 | 1 | -5/+4 |
| | | | | | | Package-Manager: portage-2.2.0_alpha118/cvs/Linux i686 Manifest-Sign-Key: 0xAE5719A3 | ||||
| * | sci-biology/infernal: Cleaned old | Justin Lecher | 2012-07-15 | 3 | -36/+8 |
| | | | | | Package-Manager: portage-2.2.0_alpha118/cvs/Linux x86_64 | ||||
| * | sci-biology/infernal: Fix cvs updates of commiter names in patches, #426588 | Justin Lecher | 2012-07-15 | 3 | -21/+29 |
| | | | | | Package-Manager: portage-2.2.0_alpha118/cvs/Linux x86_64 | ||||
| * | sci-biology/psipred: Cleaned SRC_URI | Justin Lecher | 2012-07-11 | 3 | -9/+22 |
| | | | | | Package-Manager: portage-2.2.0_alpha116/cvs/Linux x86_64 | ||||
| * | add missing test to IUSE |   Michael Sterrett | 2012-07-11 | 4 | -19/+12 |
| | | | | | Package-Manager: portage-2.1.10.65/cvs/Linux x86_64 | ||||
| * | sci-biology/psipred: Version Bump | Justin Lecher | 2012-07-10 | 5 | -29/+96 |
| | | | | | Package-Manager: portage-2.2.0_alpha116/cvs/Linux x86_64 | ||||
| * | sci-biology/vienna-rna: Cleaned old | Justin Lecher | 2012-07-10 | 5 | -167/+21 |
| | | | | | Package-Manager: portage-2.2.0_alpha116/cvs/Linux x86_64 | ||||
| * | Marking vienna-rna-1.8.5 ppc for bug 393867 |   Brent Baude | 2012-07-10 | 3 | -17/+20 |
| | | | | | Package-Manager: portage-2.1.10.65/cvs/Linux ppc64 | ||||
| * | sci-biology/allpathslg: Version bump, fix compilation errors with gcc-4.7, ↵ | Justin Lecher | 2012-07-09 | 3 | -12/+54 |
| | | | | | | | #425472 Package-Manager: portage-2.2.0_alpha116/cvs/Linux x86_64 | ||||
| * | sci-biology/mira: Drop old | Justin Lecher | 2012-07-08 | 4 | -113/+22 |
| | | | | | Package-Manager: portage-2.2.0_alpha116/cvs/Linux x86_64 | ||||
| * | sci-biology/amos: Add fix for gcc-4.7, #425264; cleaned old | Justin Lecher | 2012-07-08 | 8 | -234/+43 |
| | | | | | Package-Manager: portage-2.2.0_alpha116/cvs/Linux x86_64 | ||||
| * | sci-biology/seaview: Version Bump imported from sci overlay, prepared by ↵ | Justin Lecher | 2012-07-04 | 3 | -12/+92 |
| | | | | | | | Martin Mokrejs, #351005; fixes also compilation with gcc47, #424727 Package-Manager: portage-2.2.0_alpha115/cvs/Linux x86_64 | ||||
| * | sci-biology/plink: Moved to EAPI=4, add fix for building with gcc-4.7, #424709 | Justin Lecher | 2012-07-04 | 4 | -16/+97 |
| | | | | | Package-Manager: portage-2.2.0_alpha115/cvs/Linux x86_64 | ||||
| * | sci-biology/hmmer: Fix the patch, thanks xarthisius and bonsaikitten for help | Justin Lecher | 2012-06-28 | 3 | -136/+8 |
| | | | | | Package-Manager: portage-2.2.0_alpha114/cvs/Linux x86_64 | ||||
| * | next patch | Justin Lecher | 2012-06-28 | 1 | -0/+132 |
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| * | next try | Justin Lecher | 2012-06-28 | 2 | -11/+11 |
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| * | Plain patch | Justin Lecher | 2012-06-28 | 1 | -5/+5 |
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| * | Fix patch | Justin Lecher | 2012-06-28 | 3 | -15/+11 |
| | | | | | Package-Manager: portage-2.2.0_alpha114/cvs/Linux x86_64 | ||||
| * | fix patch again | Justin Lecher | 2012-06-28 | 3 | -11/+15 |
| | | | | | Package-Manager: portage-2.2.0_alpha114/cvs/Linux x86_64 | ||||
| * | sci-biology/hmmer: Fix patch, screwed VCS tags, #423983 | Justin Lecher | 2012-06-28 | 3 | -13/+20 |
| | | | | | Package-Manager: portage-2.2.0_alpha114/cvs/Linux x86_64 | ||||
| * | whitespace | Michael Sterrett | 2012-06-25 | 2 | -3/+3 |
| | | | | | Package-Manager: portage-2.1.10.49/cvs/Linux x86_64 | ||||
| * | marked x86 per bug 418439 |   Jeff Horelick | 2012-06-25 | 3 | -19/+8 |
| | | | | | Package-Manager: portage-2.2.0_alpha112/cvs/Linux i686 | ||||
| * | sci-biology/vaal: Version Bump | Justin Lecher | 2012-06-25 | 3 | -5/+54 |
| | | | | | Package-Manager: portage-2.2.0_alpha112/cvs/Linux x86_64 | ||||
| * | sci-biology/vaal: Drop old, #309127; Handle openmp, don't install license | Justin Lecher | 2012-06-25 | 5 | -73/+38 |
| | | | | | Package-Manager: portage-2.2.0_alpha112/cvs/Linux x86_64 | ||||
| * | Fix building with gcc-4.7 wrt #423497 by Diego Elio Pettenò ↵ |   Kacper Kowalik | 2012-06-25 | 5 | -24/+185 |
| | | | | | | | <flameeyes@gentoo.org>, drop -O3 -ggdb from CXXFLAGS Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64 | ||||
| * | sci-biology/infernal: Fix for perl-5.16, #422561; move to EAPI=4 | Justin Lecher | 2012-06-25 | 4 | -27/+167 |
| | | | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64 | ||||
| * | sci-biology/hmmer: Fix for build with perl-5.16, #421799; handle static-libs | Justin Lecher | 2012-06-25 | 5 | -26/+165 |
| | | | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64 | ||||
| * | Stable for amd64, wrt bug #418439 |   Agostino Sarubbo | 2012-06-24 | 3 | -19/+16 |
| | | | | | Package-Manager: portage-2.1.10.65/cvs/Linux x86_64 | ||||
| * | Don't install docs that are no longer there, thanks to David Abbott for the ↵ | Kacper Kowalik | 2012-06-23 | 3 | -21/+40 |
| | | | | | | | patch Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64 | ||||
| * | sci-biology/bioperl-db: Add missing DEP on dev-perl/DBD-mysql, #422999 | Justin Lecher | 2012-06-23 | 3 | -12/+18 |
| | | | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64 | ||||
| * | sci-biology/maq: Add patch for gcc-4.7, #422869 | Justin Lecher | 2012-06-23 | 4 | -11/+52 |
| | | | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64 | ||||
| * | sci-biology/last: Version BUmp, allows to compile with gcc-4.7, #422573 | Justin Lecher | 2012-06-20 | 3 | -6/+54 |
| | | | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64 | ||||
| * | sci-biology/prank: Fix compilation with gcc-4.7, #422581 | Justin Lecher | 2012-06-20 | 5 | -21/+52 |
| | | | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64 | ||||
| * | sci-biology/abyss: Fix compilation with gcc-4.7, #422599; install docs ↵ | Justin Lecher | 2012-06-20 | 7 | -13/+96 |
| | | | | | | | inside /usr/share/doc/, #297205 Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64 | ||||
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