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* Version Bump, #540356Justin Lecher2015-02-184-16/+260
| | | | | Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Drop missing patchJustin Lecher2015-02-173-19/+21
| | | | | Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Keyword ~ppc64, bug #452010.Anthony G. Basile2015-02-095-19/+33
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xF52D4BBA
* sci-biology/rebase: Version BumpJustin Lecher2015-02-023-16/+69
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Switch to CPU_FLAGS_X86.Michał Górny2015-01-2913-74/+118
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xEFB4464E!
* Convert to CPU_FLAGS_X86.Michał Górny2015-01-294-18/+34
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xEFB4464E!
* sci-biology/rebase: Drop oldJustin Lecher2015-01-263-65/+22
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for x86, wrt bug #534598Agostino Sarubbo2015-01-263-18/+21
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* sci-biology/mira: Build fix for newer gcc, #537564Justin Lecher2015-01-254-19/+41
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/mira: Version BUmp, thanks Martin Mokrejš for the workJustin Lecher2015-01-233-16/+99
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/mira: Add workaroung for m4 dir location, #536172Justin Lecher2015-01-233-20/+26
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* Port to ghc-7.8 (bug #537052 by Toralf Förster).Sergei Trofimovich2015-01-195-43/+52
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0x611FF3AA
* Stable for ppc, wrt bug #534598Agostino Sarubbo2015-01-173-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="ppc" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #534598Agostino Sarubbo2015-01-093-23/+24
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* sci-biology/trnascan-se: Version BUmp, #532460Justin Lecher2015-01-086-59/+122
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* sci-biology/cufflinks: Add upper limit for boost dep as forced by upstream, ↵Justin Lecher2015-01-085-27/+34
| | | | | | | #535716 Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/samtools: Version BUmpJustin Lecher2015-01-064-17/+262
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Version BUmp; Drop oldJustin Lecher2015-01-047-214/+31
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for ppc, wrt bug #531422Agostino Sarubbo2014-12-313-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="ppc" Manifest-Sign-Key: 0x7194459F
* Stable for ppc, wrt bug #527402Agostino Sarubbo2014-12-313-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="ppc" Manifest-Sign-Key: 0x7194459F
* Rename virtual/postgresql to dev-db/postgresqlAaron Swenson2014-12-284-11/+15
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xD1BBFDA0
* Stable for x86, wrt bug #531422Agostino Sarubbo2014-12-283-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #531422Agostino Sarubbo2014-12-273-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* Stable for x86, wrt bug #527402Agostino Sarubbo2014-12-263-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* sci-biology/seqan: Test for SSE4.1 support, #531876Justin Lecher2014-12-263-18/+29
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for amd64 wrt bug #527402José María Alonso2014-12-223-22/+23
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xF253DB15
* Drop perl herd from metadataAndreas Hüttel2014-12-193-18/+20
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xEBE6A336BE19039C!
* sci-biology/rebase: Version BumpJustin Lecher2014-12-023-16/+69
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Replace fixlocalpod with perl_delete_localpodAndreas Hüttel2014-11-164-24/+28
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xEBE6A336BE19039C!
* Update PostgreSQL dependencies and/or checks to virtual/postgresql.Aaron Swenson2014-11-034-15/+15
| | | | | Package-Manager: portage-2.2.8-r2/cvs/Linux x86_64 Manifest-Sign-Key: 0xD1BBFDA0
* Stable for amd64 wrt bug #525378José María Alonso2014-11-033-22/+23
| | | | | Package-Manager: portage-2.2.8-r2/cvs/Linux x86_64 Manifest-Sign-Key: 0xF253DB15
* sci-biology/stride: Fix 404 on patches, #525346Justin Lecher2014-10-313-19/+22
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Version BumpJustin Lecher2014-10-303-2/+77
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* sci-biology/consed: Import to tree; drop old EPAI=1 version, #526742Justin Lecher2014-10-264-80/+119
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Remove old due to old EAPIAndreas Hüttel2014-10-253-81/+23
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xEBE6A336BE19039C!
* sci-biology/seqan: Fix file collision, #526586Justin Lecher2014-10-243-18/+27
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Fix headerPatrick Lauer2014-10-196-40/+25
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* sci-biology/seqan: Version BUmpJustin Lecher2014-10-175-17/+122
| | | | | Package-Manager: portage-2.2.14_rc1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Non-maintainer commit: fix building, approved by Justin LecherSergey Popov2014-10-173-23/+22
| | | | | Package-Manager: portage-2.2.12/cvs/Linux x86_64 Manifest-Sign-Key: 0x1F357D42
* sci-biology/stride: Put patches in my devspace, #525346Justin Lecher2014-10-144-50/+30
| | | | | Package-Manager: portage-2.2.14_rc1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/express: Version BUmp; thanks Michael Schubert for the initial ↵Justin Lecher2014-10-134-11/+120
| | | | | | | patch, #525188 Package-Manager: portage-2.2.14_rc1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/cufflinks: Drop debugging flags, fix compatibility with newer ↵Justin Lecher2014-10-025-16/+120
| | | | | | | samtools, #524252 Package-Manager: portage-2.2.14_rc1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Version BUmpJustin Lecher2014-09-303-24/+55
| | | | | Package-Manager: portage-2.2.14_rc1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/cufflinks: Version BUmpJustin Lecher2014-09-253-16/+62
| | | | | Package-Manager: portage-2.2.13/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/cufflinks: Fix dep due to uncompatible samtools releaseJustin Lecher2014-09-253-13/+25
| | | | | Package-Manager: portage-2.2.13/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/samtools: Install bam headers and create libbam.so, #523644Justin Lecher2014-09-254-16/+156
| | | | | Package-Manager: portage-2.2.13/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/samtools: Add missing build dep, #523586Justin Lecher2014-09-243-21/+25
| | | | | Package-Manager: portage-2.2.13/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/plink: Rename USE lapack -> blas, fixing build problems, #514106Justin Lecher2014-09-223-23/+29
| | | | | Package-Manager: portage-2.2.13/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/samtools: Version Bump, #523224; drop oldJustin Lecher2014-09-207-169/+104
| | | | | Package-Manager: portage-2.2.13/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/vienna-rna: Version Bump, #522850Justin Lecher2014-09-154-9/+152
| | | | | Package-Manager: portage-2.2.12/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!