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* sci-libs/linux-gpib: Version bumpAndreas K. Hüttel2020-05-122-0/+179
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/linux-gpib-modules: Version bumpAndreas K. Hüttel2020-05-122-0/+70
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/vtk: fix 8.2.0 ebuildMatthias Maier2020-05-121-5/+4
| | | | | | | | | | | | | - fix bundled libproj configuration. Thanks to Tiernan Hubble for pointing this out - use system mpi4py Closes: https://bugs.gentoo.org/720372 Closes: https://bugs.gentoo.org/721412 Closes: https://bugs.gentoo.org/721802 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/scipy: amd64 stable wrt bug #722660Agostino Sarubbo2020-05-121-1/+1
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/vtk: add python compatMatthias Maier2020-05-122-2/+2
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/kim-api: add missing fortran depChristoph Junghans2020-05-111-1/+1
| | | | | | Closes: https://bugs.gentoo.org/722428 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-libs/scikits: x86 stable wrt bug #721496Mikle Kolyada2020-05-091-1/+1
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="x86" Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/scikits_learn: x86 stable wrt bug #721496Mikle Kolyada2020-05-091-1/+1
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="x86" Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/scikits: amd64 stable wrt bug #721496Mikle Kolyada2020-05-091-1/+1
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="amd64" Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/scikits_learn: amd64 stable wrt bug #721496Mikle Kolyada2020-05-091-1/+1
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="amd64" Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/linux-gpib-modules: Remove oldAndreas K. Hüttel2020-05-094-107/+0
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/linux-gpib: Remove oldAndreas K. Hüttel2020-05-093-185/+0
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/linux-gpib: Version bumpAndreas K. Hüttel2020-05-092-0/+179
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/linux-gpib-modules: Version bumpAndreas K. Hüttel2020-05-093-0/+124
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/coinor-cbc: new EAPI=7 version 2.10.5.Michael Orlitzky2020-05-083-75/+82
| | | | | | | | Standard version/EAPI update, documenting all of the now-familiar coinor-* weirdness as I go along. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-cbc: add <upstream> tag to metadata.xml.Michael Orlitzky2020-05-081-5/+9
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-cgl: new EAPI=7 version 0.60.3.Michael Orlitzky2020-05-083-69/+82
| | | | | | | | | | Standardish EAPI/version bump, documenting all of the coinor-* weirdness that I'm now familiar with. I added a subslot 0/1 corresponding to the major soname component in, for example, libCgl.so.1.10.3. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-cgl: add an "<upstream>" tag to metadata.xml.Michael Orlitzky2020-05-081-11/+14
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-vol: new EAPI=7 version 1.5.4.Michael Orlitzky2020-05-083-69/+83
| | | | | | | | | | A standard version/EAPI bump, with the usual coinor-* weirdness now somewhat documented. Portage is complaining about the precompressed example data, but I think that's a portage problem since I've explicitly excluded it with "docompress -x". Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-vol: add an "<upstream>" tag to metadata.xml.Michael Orlitzky2020-05-081-9/+12
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-dylp: new EAPI=7 version 1.10.4.Michael Orlitzky2020-05-083-64/+78
| | | | | | | | Analogous the other recent coinor-* version bumps. I've added some comments explaining the weirdness that pervades these ebuilds. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-dylp: add an "<upstream>" tag to metadata.xml.Michael Orlitzky2020-05-081-11/+14
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-clp: new EAPI=7 version 1.17.6.Michael Orlitzky2020-05-085-140/+132
| | | | | | | | | | | | | | | Another "standard" version bump that is getting less standard. I've added the usual coinor-* hacks and comments explaining them, but this package is worse than some of the others. The mumps and libscotch dependencies are being neglected in Gentoo, so a lot of that stuff is broken. To work around it, we now require sci-libs/mumps (and therefore sci-libs/scotch) to be built without USE=mpi. I don't feel great about this ebuild, but it's a necessary step towards a modern set of coinor-* packages that we can begin fixing in earnest. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-clp: add an "<upstream>" tag to metadata.xml.Michael Orlitzky2020-05-081-19/+26
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-osi: new EAPI=7 version 0.108.6.Michael Orlitzky2020-05-084-80/+86
| | | | | | | | | | | | Standard version bump and EAPI update to clean things up. I'm trying to comment the weirdness that pervades the coinor-* ebuilds as I encounter it. This new version drops support for USE=glpk, because upstream has abandoned it: they've documented that they only support ancient versions of glpk not present... well, anywhere, anymore. Closes: https://bugs.gentoo.org/521978 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-osi: add an "<upstream>" tag to metadata.xml.Michael Orlitzky2020-05-081-14/+19
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-utils: new EAPI=7 version 2.11.4.Michael Orlitzky2020-05-083-85/+102
| | | | | | | | | | | Mostly a straightforward version bump. The package has a new homepage, and now econf/emake are used in place of their autotools-utils counterparts. I added some comments about the weirdness you'll find in the coinor-* packages. Closes: https://bugs.gentoo.org/601648 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-utils: add "<upstream>" tag to metadata.xml.Michael Orlitzky2020-05-081-7/+12
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-sample: new EAPI=7 version 1.2.12.Michael Orlitzky2020-05-083-20/+17
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-sample: improve the long description in metadata.xml.Michael Orlitzky2020-05-081-1/+2
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-sample: add an "<upstream>" tag to metadata.xml.Michael Orlitzky2020-05-081-8/+11
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/linux-gpib: Remove py2.7Michał Górny2020-05-072-2/+2
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/linux-gpib: Stable for amd64Andreas K. Hüttel2020-05-071-1/+1
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/linux-gpib-modules: Stable for amd64Andreas K. Hüttel2020-05-071-1/+1
| | | | | | Closes: https://bugs.gentoo.org/704294 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/suitesparse: keyworded 5.4.0 for ppc64, bug #716982Sergei Trofimovich2020-05-061-1/+1
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-libs/klu: keyworded 1.3.9 for ppc64, bug #716982Sergei Trofimovich2020-05-061-1/+1
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-libs/suitesparse: keyworded 5.4.0 for ppc, bug #716982Sergei Trofimovich2020-05-061-1/+1
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="ppc" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-libs/klu: keyworded 1.3.9 for ppc, bug #716982Sergei Trofimovich2020-05-061-1/+1
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="ppc" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-libs/cantera: fix sci-libs/sundials-5.2.0 compatibilitySergey Torokhov2020-05-052-24/+41
| | | | | | | | | | | | | | Because of increased rate of releases of SUNDIALS package and as the 5.x branch currently doesn't break the Cantera the "*_sundials4.patch" is changed to allow <sundials-6.0. The restrictions for SUNDIALS 5.x version is now controlled by "cantera-2.4.0-r*.ebuild". The patch changes isn't affected the build process, therefore there is no patch renaming. Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: 5.2.0 version bumpSergey Torokhov2020-05-053-0/+86
| | | | | Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/cantera: Fix site-packages install pathsSergey Torokhov2020-05-052-3/+20
| | | | | | | | | Python 3.7 and 3.8 site-packages dirs are located under /lib for amd64 arch now (instead of /lib64 like for python2.7 and python3.6) so the changes for python installation patch is required. Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/cantera: Revision bump. Pass FFLAGS for FORTRANFLAGSSergey Torokhov2020-05-051-0/+131
| | | | | | | | FFLAGS env variable is passed now for FORTRANFLAGS compile option. FFLAGS is presented by default in profile (see https://bugs.gentoo.org/575446). Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/linbox: new C++ template library for linear algebra.Michael Orlitzky2020-05-044-0/+158
| | | | | | | | | | | | | This is a straightforward import of the sci-libs/linbox package from the sage-on-gentoo overlay where François Bissey has been maintaining it. Linbox is a dependency of SageMath, and users will soon be able to use the system copy of linbox; see ticket 29631 on the SageMath Trac instance. Having this in Gentoo will therefore avoid pointless rebuilds of linbox for our SageMath users. Closes: https://bugs.gentoo.org/227813 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/symengine: version bump to 0.6.0Matthias Maier2020-05-022-0/+82
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/geos: Drop 3.8.0-r1Andreas Sturmlechner2020-05-012-57/+0
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/ceres-solver: Drop 1.12.0Andreas Sturmlechner2020-05-013-99/+0
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: fix QA warningsMatthias Maier2020-05-012-4/+4
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/geos: x86 stable wrt bug #720176Agostino Sarubbo2020-05-011-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/geos: ppc64 stable wrt bug #720176Agostino Sarubbo2020-05-011-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/geos: ppc stable wrt bug #720176Agostino Sarubbo2020-05-011-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>