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* sci-libs/atlas: add 3.11.41Paul Zander2024-07-262-0/+226
| | | | | | Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/37726 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/atlas: add 3.10.3Paul Zander2024-07-263-0/+524
| | | | | | Closes: https://bugs.gentoo.org/662432 Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/atlas: add 3.10.2-r1 update to EAPI-8Paul Zander2024-07-261-11/+7
| | | | | | Closes: https://bugs.gentoo.org/836099 Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/coinor-os: treecleanArthur Zamarin2024-07-264-183/+0
| | | | | | | | | | | Closes: https://bugs.gentoo.org/934687 (pkgremoved) Closes: https://bugs.gentoo.org/928028 (pkgremoved) Closes: https://bugs.gentoo.org/862687 (pkgremoved) Closes: https://bugs.gentoo.org/836104 (pkgremoved) Closes: https://bugs.gentoo.org/811561 (pkgremoved) Closes: https://bugs.gentoo.org/741430 (pkgremoved) Closes: https://bugs.gentoo.org/526442 (pkgremoved) Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/h5hut: treecleanArthur Zamarin2024-07-265-138/+0
| | | | | | | | | | Closes: https://bugs.gentoo.org/934689 (pkgremoved) Closes: https://bugs.gentoo.org/862714 (pkgremoved) Closes: https://bugs.gentoo.org/849920 (pkgremoved) Closes: https://bugs.gentoo.org/832789 (pkgremoved) Closes: https://bugs.gentoo.org/828579 (pkgremoved) Closes: https://bugs.gentoo.org/741440 (pkgremoved) Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/trilinos: add 16.0.0Matthias Maier2024-07-232-0/+251
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/armadillo: add gitlab upstream metadataSam James2024-07-231-0/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/indilib: remove outdated LTO workaroundEli Schwartz2024-07-221-6/+1
| | | | | | Fixed is tagged in 2.0.8. Signed-off-by: Eli Schwartz <eschwartz@gentoo.org>
* sci-libs/xylib: drop 1.6Pacho Ramos2024-07-221-42/+0
| | | | Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/caffe2: fix depsAlfredo Tupone2024-07-221-0/+1
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/pytorch: add 2.3.1Alfredo Tupone2024-07-192-0/+67
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/fftw: set QA_CONFIG_IMPL_DECL_SKIP for false positiveEli Schwartz2024-07-152-0/+12
| | | | | | | | | | | The autotools check is written to always fail to link. It includes a header which on some systems contains: "UNICOS _rtc() intrinsic." On linux, it fails to link and with gcc 14 fails to compile as well, which is all as expected. Closes: https://bugs.gentoo.org/898442 Signed-off-by: Eli Schwartz <eschwartz@gentoo.org>
* sci-libs/fftw: make sure elibtoolize is appliedEli Schwartz2024-07-152-8/+16
| | | | | | Needed to e.g. pass LTO warning flags through to the linker. Signed-off-by: Eli Schwartz <eschwartz@gentoo.org>
* sci-libs/symengine: Stabilize 0.12.0 amd64, #935988Sam James2024-07-151-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/linbox: drop 1.7.0Michael Orlitzky2024-07-141-111/+0
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/symengine: Stabilize 0.12.0 arm64, #935988Sam James2024-07-151-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/linbox: Stabilize 1.7.0-r1 amd64, #936070Sam James2024-07-151-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/givaro: drop 4.1.1-r3Michael Orlitzky2024-07-144-120/+0
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/fflas-ffpack: drop 2.4.3-r3Michael Orlitzky2024-07-146-302/+0
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/linbox: drop 1.6.3-r2Michael Orlitzky2024-07-143-144/+0
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/libsigrok: drop 0.5.2-r4Viorel Munteanu2024-07-141-156/+0
| | | | Signed-off-by: Viorel Munteanu <ceamac@gentoo.org>
* sci-libs/libsigrok: drop 0.5.2-r3Viorel Munteanu2024-07-141-154/+0
| | | | Signed-off-by: Viorel Munteanu <ceamac@gentoo.org>
* sci-libs/indilib: drop 2.0.7Andreas Sturmlechner2024-07-133-120/+0
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/libsigrok: Stabilize 0.5.2-r5 amd64, #935976Arthur Zamarin2024-07-131-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/stellarsolver: add 2.6Andreas Sturmlechner2024-07-132-0/+40
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/o2scl: treecleanArthur Zamarin2024-07-123-95/+0
| | | | | | | Bug: https://bugs.gentoo.org/934133 Bug: https://bugs.gentoo.org/725622 Bug: https://bugs.gentoo.org/813240 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/coinhsl: treecleanArthur Zamarin2024-07-123-46/+0
| | | | | Closes: https://bugs.gentoo.org/933836 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/h5part: treecleanArthur Zamarin2024-07-124-63/+0
| | | | | | | | | | | Bug: https://bugs.gentoo.org/933768 Bug: https://bugs.gentoo.org/849923 Bug: https://bugs.gentoo.org/882403 Bug: https://bugs.gentoo.org/837020 Bug: https://bugs.gentoo.org/741444 Bug: https://bugs.gentoo.org/831092 Bug: https://bugs.gentoo.org/862717 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* Move {sci-libs → dev-python}/rtreeMichał Górny2024-07-104-93/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/rtree: Add python@ as co-maintainerMichał Górny2024-07-101-0/+4
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/rtree: Bump to 1.3.0Michał Górny2024-07-102-0/+37
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cfitsio: Remove oldMichał Górny2024-07-066-252/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cfitsio: Stabilize 4.4.1 amd64, #935579Arthur Zamarin2024-07-061-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/cfitsio: Stabilize 4.4.1 sparc, #935579Sam James2024-07-061-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cfitsio: Stabilize 4.4.1 ppc64, #935579Sam James2024-07-061-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libpdb: EAPI 6 -> 8Arthur Zamarin2024-07-051-11/+8
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/libpdb++: EAPI 6 -> 8Arthur Zamarin2024-07-051-11/+8
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/p4est: add 2.8.6Matthias Maier2024-07-046-0/+215
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/libsc: add 2.8.6Matthias Maier2024-07-045-0/+184
| | | | | | | - switch to compiling against default zlib instead of zlib-ng Closes: https://bugs.gentoo.org/928049 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: add 7.0.0Matthias Maier2024-07-042-0/+111
| | | | | | | | - Remove "examples" use flag and do not compile examples that never get installed. We already install the example source code unconditionally as part of the documentation. Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/scalapack: add 2.2.0_p20240704Matthias Maier2024-07-042-0/+84
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/vtk: fixed build of 9.3.0 with nvidia-cuda-toolkit-12.5 + scrubbed ↵Miroslav Šulc2024-07-049-38/+55
| | | | | | | patches Closes: https://bugs.gentoo.org/933720 Signed-off-by: Miroslav Šulc <fordfrog@gentoo.org>
* sci-libs/gmsh: add 4.13.1Matthias Maier2024-07-032-0/+138
| | | | | Closes: https://bugs.gentoo.org/929774 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/ginkgo: add 1.8.0Matthias Maier2024-07-033-0/+86
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/arborx: add 1.6Matthias Maier2024-07-032-0/+45
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/indilib: Stabilize 2.0.8 amd64, #935143Arthur Zamarin2024-07-031-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/gsl: fudge tolerance to fix a flaky testMichael Orlitzky2024-06-302-0/+109
| | | | | | | Add a non-upstream patch to embiggen this tolerance. Closes: https://bugs.gentoo.org/664936 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/stellarsolver: drop 2.5Andreas Sturmlechner2024-06-291-34/+0
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/m4ri: upstream patch for bad testsMichael Orlitzky2024-06-292-1/+34
| | | | | Closes: https://bugs.gentoo.org/908449 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/rpp: fix compilation with USE=testSv. Lockal2024-06-271-2/+8
| | | | | | | | | | * fixes "patch -p1 failed with rpp-6.1.1-skip-install-license.patch" * tests require opencv Closes: https://bugs.gentoo.org/934981 Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/37322 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>