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* dev-perl/Bio-EnsEMBL: remove fundamentally broken packageAndrew Ammerlaan2022-01-243-43/+0
| | | | | | how is this even supposed to work? Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-perl/BTLib: add blockerLucas Mitrak2021-05-252-0/+6
| | | | | | | | | | | | | | | | | | | | | | | | * add blocker against app-misc/sphinx. * added for both versions 0.19 and 0.20. Currently, the package dev-perl/BTLib has file collisions with app-misc/sphinx; therefore, they cannot be merged at on the same system. This commit adds blockers to all versions of dev-perl/BTLib against app-misc/sphinx. With this commit, they will not be able to be installed on the same system, which solves the file collision problem. Without this commit, a file collision detection will occur during emerge. This bug is similar to and was solved in the same method to Bug: https://bugs.gentoo.org/756865. This commit was tested locally within a docker w/ ebuildtester. This commit was tested, written, and submitted by Lucas Mitrak. Closes: https://bugs.gentoo.org/756796 Signed-off-by: Lucas Mitrak <lucas@lucasmitrak.com> Closes: https://github.com/gentoo/sci/pull/1081 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-perl/Bio-EnsEMBL: use perl_domoduleAndrew Ammerlaan2021-03-181-2/+1
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/Text-RecordParser: EAPI bump, add missing depAndrew Ammerlaan2021-03-031-5/+8
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/Text-Graph: EAPI bump, add missing depAndrew Ammerlaan2021-03-031-7/+8
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/Set-IntSpan-Fast: EAPI bump, add missing depAndrew Ammerlaan2021-03-031-6/+7
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/Scalar-Util-Numeric: EAPI bumpAndrew Ammerlaan2021-03-031-6/+4
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/Log-Cabin: EAPI bumpAndrew Ammerlaan2021-03-031-6/+4
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/DBIx-DBStag: EAPI bumpAndrew Ammerlaan2021-03-031-4/+3
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/Bio-BigFile: EAPI bumpAndrew Ammerlaan2021-03-031-6/+9
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/Bio-DB-Das-Chado: EAPI bumpAndrew Ammerlaan2021-03-032-5/+5
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/BTLib: version bump 0.20Andrew Ammerlaan2021-03-032-0/+17
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/BTLib: EAPI bumpAndrew Ammerlaan2021-03-031-5/+2
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/Algorithm-Loops: EAPI bumpAndrew Ammerlaan2021-03-031-3/+2
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/BTLib: update homepageAndrew Ammerlaan2021-01-201-1/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/Config-Std: drop oldAndrew Ammerlaan2021-01-192-26/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/Bio-EnsEMBL: re-gen manifestAndrew Ammerlaan2021-01-162-8/+5
| | | | | | | | upstream has no releases, so this will have to be re-genned from time to time Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/Lab-VISA: moved to ::natinstAndrew Ammerlaan2020-12-203-27/+0
| | | | Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-perl/Config-Std: version bump to 0.903Aisha Tammy2020-10-102-0/+22
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-perl/Text-ParseWords: version bump to 3.30Aisha Tammy2020-10-102-10/+7
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-perl/Time-Progress: version bump to 2.12Aisha Tammy2020-10-102-6/+7
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-{python,perl}/opal-client: drop dead packagesAisha Tammy2020-09-223-43/+0
| | | | | Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-perl/go-db-perl: drop ~x86 keywordAisha Tammy2020-09-221-9/+9
| | | | | | | also update to EAPI 7 Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-perl/opal-client: fix fatal errorsAisha Tammy2020-09-221-11/+6
| | | | | Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-perl/Bio-DB-HTS: drop packageAisha Tammy2020-09-213-48/+0
| | | | | | | present in ::gentoo Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-perl/Data-Types: drop packageAisha Tammy2020-09-212-35/+0
| | | | | | | present in ::gentoo Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-perl/go-perl: drop packageAisha Tammy2020-09-213-33/+0
| | | | | | | present in ::gentoo Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-perl/Bio-EnsEMBL: update ensembl-api.tar.gz digestMartin Mokrejs2019-07-181-1/+1
| | | | | | | | | | !!! Fetched file: ensembl-api.tar.gz VERIFY FAILED! !!! Reason: Filesize does not match recorded size !!! Got: 65241091 !!! Expected: 59450373 Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
* dev-perl/Text-RecordParser: add missing dependencyMartin Mokrejš2017-12-231-2/+4
| | | | Package-Manager: Portage-2.3.16, Repoman-2.3.6
* dev-perl/Bio-EnsEMBL: update file checksumMartin Mokrejš2017-12-141-1/+1
| | | | | | Upstream does not care to use version numbers. Package-Manager: Portage-2.3.16, Repoman-2.3.6
* Update Manifests to new hashesJustin Lecher2017-12-1018-18/+18
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Consistently ident with tabsJustin Lecher2017-11-1820-137/+137
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Cleanup remote IDsJustin Lecher2017-04-302-2/+2
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Drop masked package - dev-perl/Lab-InstrumentJustin Lecher2017-03-263-31/+0
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Drop masked package - dev-perl/Lab-ToolsJustin Lecher2017-03-263-32/+0
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* dev-perl/Lab-Instrument: Fix broken dependencyJustin Lecher2017-02-261-3/+3
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Drop leftover from CVS in HEADERJustin Lecher2017-02-2522-22/+0
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* dev-perl/Set-IntSpan-Fast: new package, needed for sci-biology/GALMartin Mokrejš2017-01-313-0/+34
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* dev-perl/Data-Types: new package, needed for sci-biology/GALMartin Mokrejš2017-01-312-0/+36
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* dev-perl/Config-Std: new package, needed for sci-biology/GALMartin Mokrejš2017-01-313-0/+39
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* dev-perl/Bio-DB-HTS: remove trailing empty lineMartin Mokrejš2016-12-071-1/+0
| | | | Package-Manager: portage-2.3.2
* dev-perl/Bio-DB-HTS: new package requiring sci-libs/[static-libs] and using ↵Martin Mokrejš2016-12-071-6/+13
| | | | | | -rpath Package-Manager: portage-2.3.2
* dev-perl/Bio-EnsEMBL: new package to provide EnsEMBL Perl APIMartin Mokrejš2016-12-023-0/+48
| | | | | | | | This is needed by sci-biology/ensembl-tools, do not miss the official installation procedure at http://www.ensembl.org/info/docs/api/api_installation.html Package-Manager: portage-2.3.2
* dev-perl/Bio-DB-HTS: upstream renamed the package, goodMartin Mokrejš2016-09-231-1/+3
| | | | Package-Manager: portage-2.3.0
* dev-perl/Bio-DB-HTS: new package, needs more fixesMartin Mokrejš2016-07-293-0/+41
| | | | Package-Manager: portage-2.3.0
* dev-perl/Algorithm-Loops: fix hardcoded version, switch from zip to tar.gz ↵Martin Mokrejš2016-07-262-3/+3
| | | | | | source file Package-Manager: portage-2.2.28
* dev-perl/Algorithm-Loops: version bump due to a LICENSE being stated by authorMartin Mokrejš2016-07-261-1/+1
| | | | Package-Manager: portage-2.2.28
* dev-perl/Scalar-Util-Numeric: new perl module needed for sci-biology/BRAKERMartin Mokrejš2016-07-013-0/+34
| | | | Package-Manager: portage-2.2.28
* dev-perl/Algorithm-Loops: new packageMartin Mokrejš2016-05-033-0/+35
| | | | | | Thanks to Andreas K. Huettel and Kent Fredrick from Gentoo perl herd. Package-Manager: portage-2.2.28
* dev-perl/Text-Graph: new packageMartin Mokrejš2016-04-113-0/+34
| | | | Package-Manager: portage-2.2.28