From d79285db369d7a3f583dbfeb3e7ae28899d93a4b Mon Sep 17 00:00:00 2001
From: Andrey Kislyuk <weaver@gentoo.org>
Date: Wed, 9 Dec 2009 20:01:51 +0000
Subject: New package, ebuild written by me. Stable snapshot pending. (Portage
 version: 2.2_rc30/cvs/Linux x86_64)

---
 sci-biology/mauve/ChangeLog         | 10 +++++++
 sci-biology/mauve/mauve-9999.ebuild | 54 +++++++++++++++++++++++++++++++++++++
 sci-biology/mauve/metadata.xml      |  9 +++++++
 3 files changed, 73 insertions(+)
 create mode 100644 sci-biology/mauve/ChangeLog
 create mode 100644 sci-biology/mauve/mauve-9999.ebuild
 create mode 100644 sci-biology/mauve/metadata.xml

(limited to 'sci-biology')

diff --git a/sci-biology/mauve/ChangeLog b/sci-biology/mauve/ChangeLog
new file mode 100644
index 000000000000..5fd8afd5e8e5
--- /dev/null
+++ b/sci-biology/mauve/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/mauve
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mauve/ChangeLog,v 1.1 2009/12/09 20:01:51 weaver Exp $
+
+*mauve-9999 (09 Dec 2009)
+
+  09 Dec 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
+  +mauve-9999.ebuild:
+  New package, ebuild written by me. Stable snapshot pending.
+
diff --git a/sci-biology/mauve/mauve-9999.ebuild b/sci-biology/mauve/mauve-9999.ebuild
new file mode 100644
index 000000000000..acb4ec899834
--- /dev/null
+++ b/sci-biology/mauve/mauve-9999.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mauve/mauve-9999.ebuild,v 1.1 2009/12/09 20:01:51 weaver Exp $
+
+EAPI="2"
+
+ESVN_REPO_URI="https://mauve.svn.sourceforge.net/svnroot/mauve/mauve/trunk"
+
+WANT_ANT_TASKS="ant-nodeps"
+EANT_GENTOO_CLASSPATH="biojava,zeus-jscl,dbus-java"
+JAVA_ANT_REWRITE_CLASSPATH="true"
+JAVA_PKG_BSFIX_NAME="build.xml"
+
+inherit subversion java-pkg-2 java-ant-2 eutils
+
+DESCRIPTION="Multiple genome alignment with large-scale evolutionary events (GUI component)"
+HOMEPAGE="http://gel.ahabs.wisc.edu/mauve/"
+SRC_URI=""
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="doc"
+KEYWORDS=""
+
+CDEPEND="~dev-java/biojava-1.6
+	>=dev-java/dbus-java-2.5.1
+	~dev-java/zeus-jscl-1.08
+	dev-java/ant-nodeps"
+RDEPEND=">=virtual/jre-1.5
+	sci-biology/mauvealigner
+	${CDEPEND}"
+DEPEND=">=virtual/jdk-1.5
+	media-gfx/icoutils
+	${CDEPEND}"
+
+S="${WORKDIR}"
+
+java_prepare() {
+	find -name '*.jar' -not -name 'jarbundler*' -print -delete
+	perl -i -ne 'print unless /<dmg/ or /<taskdef.+name="dmg"/../<\/taskdef>/' build.xml
+	perl -i -ne 'print unless /<ssh/../<\/ssh/ or /<taskdef.+name="ssh"/../<\/taskdef>/' build.xml
+	perl -i -ne 'print unless /<retroweaver/ or /<taskdef.+name="retroweaver"/../<\/taskdef>/' build.xml
+}
+
+src_install() {
+	java-pkg_dojar Mauve.jar
+
+	java-pkg_dolauncher Mauve --main org.gel.mauve.gui.Mauve
+
+	icotool -x win32/mauve.ico
+	insinto /usr/share/pixmaps
+	newins mauve_4_48x48x32.png Mauve.png
+	make_desktop_entry Mauve Mauve /usr/share/pixmaps/Mauve.png || die
+}
diff --git a/sci-biology/mauve/metadata.xml b/sci-biology/mauve/metadata.xml
new file mode 100644
index 000000000000..3302123e5718
--- /dev/null
+++ b/sci-biology/mauve/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>
-- 
cgit v1.2.3-65-gdbad