From 86d5a654aedcc13a451f66074f2a4532b4254343 Mon Sep 17 00:00:00 2001
From: Andrey Kislyuk <weaver@gentoo.org>
Date: Sat, 25 Jul 2009 18:10:34 +0000
Subject: Import from Science overlay (Portage version: 2.2_rc30/cvs/Linux
 x86_64)

---
 sci-biology/pals/ChangeLog       | 13 +++++++++++++
 sci-biology/pals/metadata.xml    |  9 +++++++++
 sci-biology/pals/pals-1.0.ebuild | 30 ++++++++++++++++++++++++++++++
 3 files changed, 52 insertions(+)
 create mode 100644 sci-biology/pals/ChangeLog
 create mode 100644 sci-biology/pals/metadata.xml
 create mode 100644 sci-biology/pals/pals-1.0.ebuild

(limited to 'sci-biology')

diff --git a/sci-biology/pals/ChangeLog b/sci-biology/pals/ChangeLog
new file mode 100644
index 000000000000..dc9bbe1c61a7
--- /dev/null
+++ b/sci-biology/pals/ChangeLog
@@ -0,0 +1,13 @@
+# ChangeLog for sci-biology/pals
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/pals/ChangeLog,v 1.1 2009/07/25 18:10:34 weaver Exp $
+
+*pals-1.0 (25 Jul 2009)
+
+  25 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
+  +pals-1.0.ebuild:
+  Import from Science overlay
+
+  18 Feb 2009; weaver <weaver@gentoo.org> ChangeLog:
+  New package sci-biology/pals, ebuild written by me
+
diff --git a/sci-biology/pals/metadata.xml b/sci-biology/pals/metadata.xml
new file mode 100644
index 000000000000..3302123e5718
--- /dev/null
+++ b/sci-biology/pals/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-biology/pals/pals-1.0.ebuild b/sci-biology/pals/pals-1.0.ebuild
new file mode 100644
index 000000000000..8f0a8605d1c5
--- /dev/null
+++ b/sci-biology/pals/pals-1.0.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/pals/pals-1.0.ebuild,v 1.1 2009/07/25 18:10:34 weaver Exp $
+
+EAPI="2"
+
+inherit toolchain-funcs
+
+DESCRIPTION="Pairwise Aligner for Long Sequences"
+HOMEPAGE="http://www.drive5.com/pals/"
+#SRC_URI="http://www.drive5.com/pals/pals_source.tar.gz"
+SRC_URI="mirror://gentoo/${P}.tar.gz"
+
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND=""
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"
+
+src_compile() {
+	emake GPP="$(tc-getCXX)" CFLAGS="${CXXFLAGS}" || die
+}
+
+src_install() {
+	dobin pals || die
+}
-- 
cgit v1.2.3-65-gdbad