From a83744e1350da9b2ff5591e77a5fb1e1eb919763 Mon Sep 17 00:00:00 2001
From: Justin Lecher <jlec@gentoo.org>
Date: Thu, 6 Oct 2011 12:59:24 +0000
Subject: Respect CFLAGS, #384369

(Portage version: 2.2.0_alpha60/cvs/Linux x86_64)
---
 sci-biology/bfast/ChangeLog              |  7 ++++++-
 sci-biology/bfast/bfast-0.6.5a-r1.ebuild | 31 +++++++++++++++++++++++++++++++
 2 files changed, 37 insertions(+), 1 deletion(-)
 create mode 100644 sci-biology/bfast/bfast-0.6.5a-r1.ebuild

(limited to 'sci-biology/bfast')

diff --git a/sci-biology/bfast/ChangeLog b/sci-biology/bfast/ChangeLog
index 62f742106dd7..0032348fde5d 100644
--- a/sci-biology/bfast/ChangeLog
+++ b/sci-biology/bfast/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/bfast
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.5 2011/07/15 15:38:43 xarthisius Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.6 2011/10/06 12:59:24 jlec Exp $
+
+*bfast-0.6.5a-r1 (06 Oct 2011)
+
+  06 Oct 2011; Justin Lecher <jlec@gentoo.org> +bfast-0.6.5a-r1.ebuild:
+  Respect CFLAGS, #384369
 
   15 Jul 2011; Kacper Kowalik <xarthisius@gentoo.org> -bfast-0.6.4c.ebuild,
   -bfast-0.6.4d.ebuild:
diff --git a/sci-biology/bfast/bfast-0.6.5a-r1.ebuild b/sci-biology/bfast/bfast-0.6.5a-r1.ebuild
new file mode 100644
index 000000000000..a8abd53d3aa2
--- /dev/null
+++ b/sci-biology/bfast/bfast-0.6.5a-r1.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.6.5a-r1.ebuild,v 1.1 2011/10/06 12:59:24 jlec Exp $
+
+EAPI=4
+
+inherit autotools
+
+DESCRIPTION="Blat-like Fast Accurate Search Tool"
+HOMEPAGE="https://sourceforge.net/projects/bfast/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND="dev-perl/XML-Simple"
+
+src_prepare() {
+	sed \
+		-e 's/-m64//' \
+		-e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \
+		-e 's:-g -O2::g' \
+		-i configure.ac || die
+	sed \
+		-e 's:. test.definitions.sh:. ./test.definitions.sh:g' \
+		-i tests/*sh || die
+	eautoreconf
+}
-- 
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